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Entrez Gene ID
- 1045 (Go to NCBI)
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Symbol
- CDX2
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Synonyms
- CDX-3, CDX3
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Description
- caudal type homeobox 2
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Type of Gene
- protein-coding
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Chromosome
- 13
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Location
- 13q12.3
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RNA Seq 1
Sample Expression RPKM adipose 0 colon 3.8 heart 0 hypothalamus 0 kidney 0 liver 0 lung 0 ovary 0 skeletalmuscle 0 spleen 0 testes 0 -
Protein
Tissue Cell type Staining level Reliability adrenal gland glandular cells Negative Supportive appendix glandular cells Strong Supportive appendix lymphoid tissue Negative Supportive bone marrow hematopoietic cells Negative Supportive breast glandular cells Negative Supportive bronchus respiratory epithelial cells Negative Supportive cerebellum cells in granular layer Negative Supportive cerebellum cells in molecular layer Negative Supportive cerebellum Purkinje cells Negative Supportive cerebral cortex glial cells Negative Supportive cerebral cortex neuronal cells Negative Supportive cervix, uterine glandular cells Negative Supportive cervix, uterine squamous epithelial cells Negative Supportive colon glandular cells Strong Supportive duodenum glandular cells Strong Supportive epididymis glandular cells Negative Supportive esophagus squamous epithelial cells Negative Supportive fallopian tube glandular cells Negative Supportive gall bladder glandular cells Negative Supportive heart muscle myocytes Negative Supportive hippocampus glial cells Negative Supportive hippocampus neuronal cells Negative Supportive kidney cells in glomeruli Negative Supportive kidney cells in tubules Negative Supportive lateral ventricle glial cells Negative Supportive lateral ventricle neuronal cells Negative Supportive liver bile duct cells Negative Supportive liver hepatocytes Negative Supportive lung macrophages Negative Supportive lung pneumocytes Negative Supportive lymph node germinal center cells Negative Supportive lymph node non-germinal center cells Negative Supportive nasopharynx respiratory epithelial cells Negative Supportive oral mucosa squamous epithelial cells Negative Supportive ovary follicle cells Negative Supportive ovary ovarian stroma cells Negative Supportive pancreas exocrine glandular cells Negative Supportive pancreas islets of Langerhans Negative Supportive parathyroid gland glandular cells Negative Supportive placenta decidual cells Negative Supportive placenta trophoblastic cells Negative Supportive prostate glandular cells Negative Supportive rectum glandular cells Strong Supportive salivary gland glandular cells Negative Supportive seminal vesicle glandular cells Negative Supportive skeletal muscle myocytes Negative Supportive skin epidermal cells Negative Supportive small intestine glandular cells Moderate Supportive smooth muscle smooth muscle cells Negative Supportive spleen cells in red pulp Negative Supportive spleen cells in white pulp Negative Supportive stomach, lower glandular cells Negative Supportive stomach, upper glandular cells Negative Supportive testis cells in seminiferus ducts Negative Supportive testis Leydig cells Negative Supportive thyroid gland glandular cells Negative Supportive tonsil germinal center cells Negative Supportive tonsil non-germinal center cells Negative Supportive urinary bladder urothelial cells Negative Supportive uterus, post-menopause cells in endometrial stroma Negative Supportive uterus, post-menopause glandular cells Negative Supportive uterus, pre-menopause cells in endometrial stroma Negative Supportive uterus, pre-menopause glandular cells Negative Supportive vagina squamous epithelial cells Negative Supportive vulva/anal skin epidermal cells Negative Supportive -
Gene Ontology
GO ID GO term PubMed Category GO:0000794 condensed nuclear chromosome Component GO:0017053 transcriptional repressor complex Component GO:0003700 sequence-specific DNA binding transcription factor activity Function GO:0003714 transcription corepressor activity Function GO:0000976 transcription regulatory region sequence-specific DNA binding Function GO:0009952 anterior/posterior pattern specification Process GO:0001568 blood vessel development Process GO:0008333 endosome to lysosome transport Process GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity Process GO:0060711 labyrinthine layer development Process GO:0000122 negative regulation of transcription from RNA polymerase II promoter Process GO:0009887 organ morphogenesis 9052785 Process GO:0045597 positive regulation of cell differentiation Process GO:0035019 somatic stem cell maintenance Process GO:0006366 transcription from RNA polymerase II promoter 9459001 Process GO:0001829 trophectodermal cell differentiation Process
- Krupp M et al. (2012) RNA-Seq Atlas - a reference database for gene expression profiling in normal tissue by next-generation sequencing. Bioinformatics, 28, 1184-1185. doi:10.1093/bioinformatics/bts084