CellFinder · Gene

Gene: COL1A1

Entrez Gene ID
- 1277 (Go to NCBI)
Symbol
- COL1A1
Synonyms
- OI4
Description
- collagen, type I, alpha 1
Type of Gene
- protein-coding
Chromosome
- 17
Location
- 17q21.33

RNA Seq ¹

Sample	Expression	RPKM
adipose		12.06
colon		8.03
heart		3.59
hypothalamus		0.86
kidney		0.95
liver		0.24
lung		2.69
ovary		18.17
skeletalmuscle		0.77
spleen		3.44
testes		2.05

Gene Ontology

GO ID	GO term	PubMed	Category
GO:0005584	collagen type I	14976317	Component
GO:0005788	endoplasmic reticulum lumen		Component
GO:0031012	extracellular matrix		Component
GO:0031012	extracellular matrix		Component
GO:0005576	extracellular region		Component
GO:0005615	extracellular space		Component
GO:0005201	extracellular matrix structural constituent		Function
GO:0042802	identical protein binding	17211858	Function
GO:0048407	platelet-derived growth factor binding	8900172	Function
GO:0005515	protein binding	14749390	Function
GO:0007411	axon guidance		Process
GO:0007596	blood coagulation		Process
GO:0001568	blood vessel development	17211858	Process
GO:0060346	bone trabecula formation		Process
GO:0060351	cartilage development involved in endochondral bone morphogenesis		Process
GO:0071230	cellular response to amino acid stimulus		Process
GO:0071363	cellular response to growth factor stimulus		Process
GO:0071260	cellular response to mechanical stimulus		Process
GO:0071300	cellular response to retinoic acid		Process
GO:0032964	collagen biosynthetic process	15095409	Process
GO:0030199	collagen fibril organization	14976317	Process
GO:0048706	embryonic skeletal system development	18553566	Process
GO:0001958	endochondral ossification		Process
GO:0030198	extracellular matrix organization		Process
GO:0060325	face morphogenesis		Process
GO:0001957	intramembranous ossification		Process
GO:0050900	leukocyte migration		Process
GO:0010812	negative regulation of cell-substrate adhesion		Process
GO:0001649	osteoblast differentiation		Process
GO:0030168	platelet activation		Process
GO:0090263	positive regulation of canonical Wnt receptor signaling pathway		Process
GO:0030335	positive regulation of cell migration		Process
GO:0010718	positive regulation of epithelial to mesenchymal transition		Process
GO:0045893	positive regulation of transcription, DNA-dependent		Process
GO:0070208	protein heterotrimerization		Process
GO:0034504	protein localization to nucleus		Process
GO:0015031	protein transport		Process
GO:0051591	response to cAMP		Process
GO:0031960	response to corticosteroid stimulus		Process
GO:0042542	response to hydrogen peroxide		Process
GO:0043434	response to peptide hormone stimulus		Process
GO:0007605	sensory perception of sound	17489845	Process
GO:0001501	skeletal system development	14976317	Process
GO:0043589	skin morphogenesis	17211858	Process
GO:0034505	tooth mineralization	17118335	Process
GO:0007601	visual perception	17557158	Process

Krupp M et al. (2012) RNA-Seq Atlas - a reference database for gene expression profiling in normal tissue by next-generation sequencing. Bioinformatics, 28, 1184-1185. doi:10.1093/bioinformatics/bts084

Gene: COL1A1

Entrez Gene ID

Symbol

Synonyms

Description

Type of Gene

Chromosome

Location

RNA Seq 1

Gene Ontology

RNA Seq ¹