Gene: ABCA3

  • Entrez Gene ID

  • Symbol

    • ABCA3
  • Synonyms

    • ABC-C, ABC3, EST111653, LBM180, SMDP3
  • Description

    • ATP-binding cassette, sub-family A (ABC1), member 3
  • Type of Gene

    • protein-coding
  • Chromosome

    • 16
  • Location

    • 16p13.3
  • RNA Seq 1

    Sample Expression RPKM
    adipose
    0.15
    colon
    0.14
    heart
    0.19
    hypothalamus
    2.15
    kidney
    0.32
    liver
    0.01
    lung
    3.81
    ovary
    0.09
    skeletalmuscle
    0.17
    spleen
    0.3
    testes
    0.27
  • Protein

    Tissue Cell type Staining level Reliability
    adrenal gland glandular cells Strong Uncertain
    appendix glandular cells Moderate Uncertain
    appendix lymphoid tissue Moderate Uncertain
    bone marrow hematopoietic cells Moderate Uncertain
    breast glandular cells Moderate Uncertain
    bronchus respiratory epithelial cells Moderate Uncertain
    cerebellum cells in granular layer Weak Uncertain
    cerebellum cells in molecular layer Strong Uncertain
    cerebellum Purkinje cells Strong Uncertain
    cerebral cortex glial cells Weak Uncertain
    cerebral cortex neuronal cells Strong Uncertain
    cervix, uterine glandular cells Moderate Uncertain
    cervix, uterine squamous epithelial cells Weak Uncertain
    colon glandular cells Moderate Uncertain
    duodenum glandular cells Moderate Uncertain
    epididymis glandular cells Strong Uncertain
    esophagus squamous epithelial cells Moderate Uncertain
    fallopian tube glandular cells Strong Uncertain
    gall bladder glandular cells Moderate Uncertain
    heart muscle myocytes Moderate Uncertain
    hippocampus glial cells Weak Uncertain
    hippocampus neuronal cells Moderate Uncertain
    kidney cells in glomeruli Moderate Uncertain
    kidney cells in tubules Weak Uncertain
    lateral ventricle glial cells Weak Uncertain
    lateral ventricle neuronal cells Moderate Uncertain
    liver bile duct cells Weak Uncertain
    liver hepatocytes Moderate Uncertain
    lung macrophages Moderate Uncertain
    lung pneumocytes Strong Uncertain
    lymph node germinal center cells Moderate Uncertain
    lymph node non-germinal center cells Moderate Uncertain
    nasopharynx respiratory epithelial cells Strong Uncertain
    oral mucosa squamous epithelial cells Weak Uncertain
    ovary ovarian stroma cells Negative Uncertain
    pancreas exocrine glandular cells Moderate Uncertain
    parathyroid gland glandular cells Weak Uncertain
    placenta decidual cells Moderate Uncertain
    placenta trophoblastic cells Moderate Uncertain
    prostate glandular cells Strong Uncertain
    rectum glandular cells Moderate Uncertain
    salivary gland glandular cells Moderate Uncertain
    seminal vesicle glandular cells Strong Uncertain
    skeletal muscle myocytes Moderate Uncertain
    skin epidermal cells Weak Uncertain
    small intestine glandular cells Weak Uncertain
    smooth muscle smooth muscle cells Negative Uncertain
    spleen cells in red pulp Moderate Uncertain
    spleen cells in white pulp Strong Uncertain
    stomach, lower glandular cells Moderate Uncertain
    stomach, upper glandular cells Strong Uncertain
    testis cells in seminiferus ducts Strong Uncertain
    testis Leydig cells Strong Uncertain
    thyroid gland glandular cells Strong Uncertain
    tonsil germinal center cells Moderate Uncertain
    tonsil non-germinal center cells Moderate Uncertain
    tonsil squamous epithelial cells Moderate Uncertain
    urinary bladder urothelial cells Moderate Uncertain
    uterus, post-menopause cells in endometrial stroma Moderate Uncertain
    uterus, post-menopause glandular cells Moderate Uncertain
    uterus, pre-menopause cells in endometrial stroma Moderate Uncertain
    uterus, pre-menopause glandular cells Moderate Uncertain
    vagina squamous epithelial cells Negative Uncertain
    vulva/anal skin epidermal cells Weak Uncertain
  • Gene Ontology

    GO ID GO term PubMed Category
    GO:0097208 alveolar lamellar body 11718719 Component
    GO:0097233 alveolar lamellar body membrane Component
    GO:0016021 integral to membrane Component
    GO:0016020 membrane 9027511 Component
    GO:0005886 plasma membrane 11718719 Component
    GO:0005886 plasma membrane Component
    GO:0005524 ATP binding Function
    GO:0042626 ATPase activity, coupled to transmembrane movement of substances 9027511 Function
    GO:0005215 transporter activity 9027511 Function
    GO:0042493 response to drug 8706931 Process
    GO:0055085 transmembrane transport Process
    GO:0006810 transport 15531465 Process
  1. Krupp M et al. (2012) RNA-Seq Atlas - a reference database for gene expression profiling in normal tissue by next-generation sequencing. Bioinformatics, 28, 1184-1185. doi:10.1093/bioinformatics/bts084